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Publications


Selected Publications since 2021 (as First/Corresponding Author)​

2025

Quality-Aware Translation Tagging in Multilingual RAG system (Accepted)

Byeolhee Kim, Hoyeon Moon, Nikhil Verma

Proceedings of the Fifth Workshop on Multilingual Representation Learning (MRL 2025) 

 

Tailored Strategies for Applying Large Language Models in Clinical Settings and Addressing Data Security Challenge

Tae Joon Jun

The Korean Journal of Medicine

Multimodal Deep Learning for Predicting Post-Transplant Renal Function in Living Donor Kidney Transplantation 

Jin-Myung Kim, HyoJe Jung, Hye Eun Kwon, Youngmin Ko, Joo Hee Jung, Sung Shin, Young Hoon Kim, Young-Hak Kim, Tae Joon Jun,  Hyunwook Kwon 

International Journal of Surgery

Protecting Medical Privacy with Pretrained Language Models: Named Entity Recognition- based De-identification in Korean Unstructured Electronic Medical Records

Jiahn Seo, Yunha Kim, Heejung Choi, Minkyoung Kim, JiYe Han, Gaeun Kee, Soyoung Ko, HyoJe Jung, Byeolhee Kim, Boeun Choi, Sanghyun Park, Tae Joon Jun, Young-Hak Kim

npj Health Systems

Cognizant Embeddings of ICD Codes via BERT: Leveraging Patient Diagnostic Patterns from a Large-scale Cardiovascular EMR Repository

Minkyoung Kim, Yunha Kim, Hee Jun Kang, Hyeram Seo, Heejung Choi, JiYe Han, Gaeun Kee, Soyoung Ko, HyoJe Jung, Byeolhee Kim, Boeun Choi, Tae Joon Jun, Young-Hak Kim

BMC Medical Informatics and Decision Making

Clinical Assessment of Fine-tuned Open-source LLMs in Cardiology: From Progress Notes to Discharge Summary

HyoJe Jung, Yunha Kim, Jiahn Seo, Heejung Choi, Minkyung Kim, Jiye Han, Gaeun Kee, Soyoung Ko, Byeolhee Kim, Boeun Choi, Ah-Ram Kim, Jung-Min Ahn, Tae Joon Jun, Young-Hak Kim

Journal of Healthcare Informatics Research

Automated, Standardized, Quantitative Analysis of Cardiovascular Borders on Chest X-Rays Using Deep Learning

June-Goo Lee, Tae Joon Jun, Gyujun Jeong, Hongmin Oh, Sijoon Kim, Heejun Kang, Jung Bok Lee, Hyun Jung Koo, Jong Eun Lee, Joon-Won Kang, Yura Ahn, Sang Min Lee, Joon Beom Seo, Seong Ho Park, Min Soo Cho, Jung-Min Ahn, Duk-Woo Park, Joon Bum Kim, Cherry Kim, Young Joo Suh, Iksung Cho, Marly van Assen, Carlo N. De Cecco, Eun Ju Chun, Young-Hak Kim, Dong Hyun Yang

JACC: Advances

Impact of diabetes on risk of major adverse cardiovascular events associated with lipoprotein(a) levels in patients with established atherosclerotic cardiovascualr disease

Minkyoung Kim, Kyuwoong Kim, Jiye Han, Hyeyun Jung, Ah-Ram Kim, Tae Joon Jun, Young-Hak Kim

European Journal of Preventive Cardiology

Cardiovascular Outcomes of Early LDL-C Goal Achievement in Patient with Very-High-Risk ASCVD

Jiye Han, Ah-Ram Kim, Minkyoung Kim, Hojoon Lee, Yeon-Hee Baek, Imjin Ahn, Heejun Kang, Ji Seon Oh, Juhyeon Kim, Osung Kwon, Tae Joon Jun, Sun U Kwon, Young-Hak Kim

Cardiology and Therapy

Predicting low density lipoprotein cholesterol target attainment using machine learning in patients with coronary artery disease receiving moderate-dose statin therapy

Jiye Han, Yunha Kim, Heejun Kang, Jiahn Seo, Heejung Choi, Minkyoung Kim, Gaeun Kee, Seohyun Park, Soyoung Ko, Hyoje Jung, Byeolhee Kim, Tae Joon Jun, Young-Hak Kim

Scientific Reports

Fine-Tuning LLMs with Medical Data: Can Safety Be Ensured?

Minkyoung Kim, Yunha Kim, Heejun Kang, Jiahn Seo, Heejung Choi, Jiye Han, Gaeun Kee, Seohyun Park, Soyoung Ko, Hyoje Jung, Byeolhee Kim, Tae Joon Jun, Young-Hak Kim

NEJM AI

2024

Medical language model specialized in extracting cardiac knowledge

Hansle Gwon, Jiahn Seo, Seohyun Park, Tae Joon Jun, Young-Hak Kim

Scientific Reports

Explainable predictions of a machine learning model to forecast the postoperative length of stay for severe patients: Machine Learning Model Development and Evaluation

Ha Na Cho, Imjin Ahn, Hansle Gwon, Hee Jun Kang, Yunha Kim, Jiahn Seo, Heejung Choi, Minkyoung Kim, Jiye Han, 

Gaeun Kee, Seohyun Park, Tae Joon Jun, Young-Hak Kim

BMC Medical Informatics and Decision Making

Task-Specific Transformer-Based Language Models in Health Care: Scoping Review 

Ha Na Cho, Hee Jun Kang, Imjin Ahn, Hansle Gwon, Yunha Kim, Jiahn Seo, Heejung Choi, Minkyoung Kim, Jiye Han,

Gaeun Kee, Seohyun Park, Soyoung Ko,  Tae Joon Jun, Young-Hak Kim

JMIR Medical Informatics

Development and transfer learning of self-attention model for major adverse cardiovascular events prediction across hospitals 

Yunha Kim, Heejun Kang, Jiahn Seo, Heejung Choi, Minkyoung Kim, Jiye Han, Gaeun Kee, Seohyun Park, Soyoung Ko, Hyoje Jung, Byeolhee Kim, Tae Joon Jun, Jaehyung Roh, Young-Hak Kim

Scientific Reports

Cardiovascular outcomes associated with isolated systolic or diastolic hypertension according to  the 2017 AHA/ACC guideline in adult cancer survivors

Kyuwoong Kim, Hyeyun Jung, Edvige Di Giovanna, Tae Joon Jun, Young-Hak Kim

JAHA: Journal of the American Heart Association

Predicting Prognostic Factors in Kidney Transplantation Using a Machine Learning Approach to Enhance Outcome Predictions: a retrospective cohort study

Jin-Myung Kim, Hyoje Jung, Sung Shin, Hye Eun Kwon, Youngmin Ko, Joo Hee Jung, Hyunwook Kwon, Young Hoon Kim, Tae Joon Jun, Sang-Hyun Hwang

International Journal of Surgery

Time series forecasting of weight for diuretic dose adjustment using bidirectional long short-term memory

Heejung Choi,  Yunha Kim,  Heejun Kang, Jiahn Seo, Minkyoung Kim, Jiye Han, Gaeun Kee, Seohyun Park, Soyoung Ko, Hyoje Jung, Byeolhee Kim, Jaehyng Rho, Tae Joon Jun, Young-Hak Kim

Scientific Reports

Forecasting hospital room and ward occupancy using static and dynamic information concurrently

Jiahn Seo, Imjin Ahn, Hansle Gwon, Hee Jun Kang, Yunha Kim, Heejung Choi, Minkyoung Kim, JiYe Han, Gaeun Kee, Seohyun Park, Soyoung Ko, Hyoje Jung, Byeolhee Kim, Jungsik Oh, Tae Joon Jun, Young-Hak Kim

JMIR Medical Informatics

Association of metabolic health and obesity with coronary heart disease in adult cancer survivors

Kyuwoong KimEdvige Di GiovannaHyeyun JungLakshimi Deepak BethineediTae Joon JunYoung-Hak Kim

European Journal of Clinical Investigation 

Are polypharmacy side effects predicted by public data still valid in real-world data?

Gaeun Kee, Hee Jun Kang, Imjin Ahn, Hansle Gwon, Yunha Kim, Jiahn Seo, Heejung Choi, Ha Na Cho, Minkyoung Kim, JiYe Han, Seohyun Park, Kyuwoong Kim, Tae Joon Jun, Young-Hak Kim

Heliyon​

LDP-GAN : Generative adversarial networks with local differential privacy for patient medical records synthesis
Hansle Gwon, Imjin Ahn, Yunha Kim, Hee Jun Kang, Jiahn Seo, Heejung Choi, Ha Na Cho, Minkyoung Kim, JiYe Han, Gaeun Kee, Seohyun Park, Kye Hwa Lee, Tae Joon Jun, Young-Hak Kim

Computers in Biology and Medicine

2023

Machine learning models to predict the warfarin discharge dosage using clinical information of East Asian inpatients

Heejung Choi, Hee Jun Kang, Imjin Ahn, Hansle Gwon, Yunha Kim, Jiahn Seo, Ha Na Cho, JiYe Han, Minkyoung Kim, Gaeun Kee, Seohyun Park, Osung Kwon, Jae-Hyung Roh, Ah-Ram Kim, Ju Hyeon Kim, Tae Joon Jun, Young-Hak Kim

Scientific Reports 

Prediction of hospitalization and waiting time within 24 hours of emergency department patients with unstructured text data

Jiahn Seo, Imjin Ahn, Hansle Gwon, Hee Jun Kang, Yunha Kim, Ha Na Cho, Heejung Choi, Minkyoung Kim, Jiye Han, Gaeun Kee, Seohyun Park, Dong-Woo Seo, Tae Joon Jun, Young-Hak Kim

Health Care Management Science

Increased risk of ischemic stroke associated with elevated gamma-glutamyl transferase level in adult cancer survivors: a population-based cohort study

Kyuwoong KimHyeyun JungEdvige Di Giovanna,Tae Joon JunYoung-Hak Kim

Scientific Reports 

Association of dietary sodium intake with impaired fasting glucose in adult cancer survivors: a population-based cross-sectional study
Kyuwoong Kim, Hamee Kim, Tae Joon Jun, Young-Hak Kim
PLoS ONE​

2022

Angiogenic adipokine C1q-TNF-related protein 9 ameliorates myocardial infarction via histone deacetylase 7-mediated MEF2 activation
Seung Min Lee, Jin Woo Lee, Inki Kim, Dong-Cheol Woo, Chan-Gi Pack, Young Hoon Sung, In-Jeoung Baek, Chang Hee Jung, Young-Hak Kim, Chang Hoon Ha
Science Advances 

Heterogeneous graph construction and HinSAGE learning from electronic medical records
Ha Na Cho, Imjin Ahn, Hansle Gwon, Hee Jun Kang, Yunha Kim, Jiahn Seo , Heejung Choi, Minkyoung Kim, Jiye Han, Gaeun Kee, Tae Joon Jun, Young-Hak Kim
Scientific Reports ​

Fully automatic coronary calcium scoring in non-ECG-gated low-dose chest CT: comparison with ECG-gated cardiac CT
Young Joo Suh, Cherry Kim, June-Goo Lee, Hongmin Oh, Heejun Kang, Young-Hak Kim, Dong Hyun Yang
European Radiology 

RIDAB: Electronic medical record-integrated real world data platform for predicting and summarizing interactions in biomedical research from heterogeneous data resources
Yunha Kim, Imjin Ahn, Ha Na Cho, Hansle Gwon, Hee Jun Kang, Jiahn Seo, Heejung Choi, Kyu-Pyo Kim, Tae Joon Jun, Young-Hak Kim
Computer Methods and Programs in Biomedicine 

Electronic Medical Record–Based Machine Learning Approach to Predict the Risk of 30-Day Adverse Cardiac Events After Invasive Coronary Treatment: Machine Learning Model Development and Validation
Osung Kwon, Wonjun Na, Hee Jun Kang, Tae Joon Jun, Jihoon Kweon, Gyung-Min Park, YongHyun Cho, Cinyoung Hur, Jungwoo Chae, Do-Yoon Kang, Pil Hyung Lee, Jung-Min Ahn, Duk-Woo Park, Soo-Jin Kang, Cheol Whan Lee, Seung-Whan Lee, Seong-Wook Park, Seung-Jung Park, Dong Hyun Yang, Young-Hak Kim
JMIR Medical Informatics 

Predicting Long-term Survival After Allogeneic Hematopoietic Cell Transplantation in Patients With Hematologic Malignancies: Machine Learning–Based Model Development and Validation
Eun-Ji Choi, Tae Joon Jun, Han-Seung Park, Jung-Hee Lee, Kyoo-Hyung Lee,  Young-Hak Kim, Young-Shin Lee, Young-Ah Kang, Mijin Jeon, Hyeran Kang, Ji Min Woo, Je-Hwan Le
JMIR Medical Informatics 

2021

Deep reinforcement learning for guidewire navigation in coronary artery phantom
Jihoon Kweon, Kyunghwan Kim, Chaehyuk Lee, Hwi Kwon, Jinwoo Park, Kyoseok Song, Young In Kim, Jeeone Park, Inwook Back, Jae-Hyung Roh, Youngjin Moon, Jaesoon Choi, Young-Hak Kim
IEEE Access 

Machine Learning-Based Hospital Discharge Prediction for Patients With Cardiovascular Diseases: Development and Usability Study
Imjin Ahn, Hansle Gwon, Yunha Kim, Hee Jun Kang, Jiahn Seo, Heejung Choi, Ha Na Cho, Tae Joon Jun, Young-Hak Kim
JMIR Medical Informatics 

TRk-CNN: Transferable Ranking-CNN for image classification of glaucoma, glaucoma suspect, and normal eyes
Tae Joon Jun, Youngsub Eom, Dohyeun Kim, Cherry Kim, Ji-Hye Park, Hoang Minh Nguyen, Young-Hak Kim, Daeyoung Kim
Expert Systems with Applications 

Fully Automatic Coronary Calcium Score Software Empowered by Artificial Intelligence Technology: Validation Study Using Three CT Cohorts
June-Goo Lee, HeeSoo Kim, Heejun Kang, Hyun Jung Koo, Joon-Won Kang, Young-Hak Kim Dong Hyun Yang
Korean Journal of Radiology ​

Self–Training With Quantile Errors for Multivariate Missing Data Imputation for Regression Problems in Electronic Medical Records: Algorithm Development Study
Hansle Gwon, Imjin Ahn, Yunha Kim, Hee Jun Kang, Jiahn Seo, Ha Na Cho, Heejung Choi, Tae Joon Jun, Young-Hak Kim
JMIR Public Health and Surveillance

Cardiovascular Event Rates in Statin-Treated Korean Patients with Cardiovascular Disease: Estimates from a Real-World Population using Electronic Medical Record Data
Osung Kwon, Wonjun Na, Jaehee Hur, Ju Hyeon Kim, Tae Joon Jun, Hee Jun Kang, Hojoon Lee, Young-Hak Kim
Cardiovascular Drugs and Therapy 

xECGNet: Fine-tuning attention map within CNN to improve detection and explainability of concurrent cardiac arrhythmias
Jungsun Yoo, Tae Joon Jun, Young-Hak Kim
Computer Methods and Programs in Biomedicine​

Impact of coronary calcium score and lesion characteristics on the diagnostic performance of machine-learning-based computed tomography-derived fractional flow reserve
Hyun Jung Koo, Joon-Won Kang, Soo-Jin Kang, Jihoon Kweon, June-Goo Lee, Jung-Min Ahn, Duk-Woo Park, Seung Whan Lee, Cheol Whan Lee, Seong-Wook Park, Seung-Jung Park, Young-Hak Kim, Dong Hyun Yang
European Heart Journal - Cardiovascular Imaging 

Neurological and clinical status from early time point to long-term follow-up after in-hospital cardiac arrest
Sang-Beom Jeon, Hyunjo Lee, Bobin Park, Soh Hyun Choi, Yoon-Hee Hong, Won Young Kim, Sang-Bum Hong, Young-Hak Kim
Resuscitation ​

CardioNet: A manually curated database for artificial intelligence-based research on cardiovascular diseases
Imjin Ahn, Wonjun Na, Osung Kwon, Dong Hyun Yang, Gyung-Min Park, Hansle Gwon, Hee Jun Kang, Yeon Uk Jeong, Jungsun Yoo, Yunha Kim, Tae Joon Jun, Young-Hak Kim
BMC Medical Informatics and Decision Making ​​

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